PH01002886G0080's details annotation
1.Annotation
ICBR annotation: dihydrodipicolinate reductase, putative, expressed
Blast result AT2G44040 : 3.00E-116
Blast annotation: Dihydrodipicolinate reductase, bacterial/plant
2.Location
Scaffold: PH01002886
Strand: +
| Region | Start | End |
| gene | 51960 | 57394 |
| mRNA | 51960 | 57394 |
| exon | 51960 | 52856 |
| exon | 55423 | 55556 |
| exon | 55637 | 55711 |
| exon | 56185 | 56257 |
| exon | 56587 | 57394 |
| CDS | 52640 | 52856 |
| CDS | 55423 | 55556 |
| CDS | 55637 | 55711 |
| CDS | 56185 | 56257 |
| CDS | 56587 | 56870 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01113.19 | DapB_N | 69 | 192 |
| PF05173.13 | DapB_C | 196 | 336 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Lysine biosynthesis | 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] | ko00300 | K00215 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008839 | 4-hydroxy-tetrahydrodipicolinate reductase |
| GO:0009089 | lysine biosynthetic process via diaminopimelate |
| GO:0009507 | chloroplast |
| GO:0055114 | oxidation-reduction process |
| GO:0070402 | NADPH binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.