Gene details

Annotation of co-expression genes

PH01002887G0070's details annotation

1.Annotation

ICBR annotation: DNA-directed RNA polymerase subunit, putative, expressed

Blast result AT5G51940 : 1.00E-46
Blast annotation: RNA polymerase Rpb6

2.Location

Scaffold: PH01002887
Strand: +

3.Network

Co-expression Network Category	Global Network	Conditional Network
Co-expression Positive	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Co-expression Negative	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Predict protein-portein interaction	details
miRNA-targets relationship	null

4.Functional module

Method	Module ID	Function Annotation
coexpression network	CFinderM000333	protein arginylation, RNA_polymerase_complex arginyltransferase activity, transcription, DNA-dependent, DNA-directed RNA polymerase activity,

5.Cis-elements

6.Expression profilings

7.Gene family

Category	Family
null	null

8.Protein domain

Pfam Accession	Pfam Annotation	Alignment Start	Alignment Start
PF01192.21	RNA_pol_Rpb6	60	111

9.KEGG Pathway

Pathway	KEGG Ortholog	Pathway ID	KO
Purine metabolism	DNA-directed RNA polymerases I, II, and III subunit RPABC	ko00230	K03014
Pyrimidine metabolism	DNA-directed RNA polymerases I, II, and III subunit RPABC	ko00240	K03014
RNA polymerase	DNA-directed RNA polymerases I, II, and III subunit RPABC	ko03020	K03014

10.Gene Ontology

GO Accession	GO Annotation
GO:0003677	DNA binding
GO:0003899	DNA-directed RNA polymerase activity
GO:0006351	transcription, DNA-dependent
GO:0030880	RNA polymerase complex

      Maintained by Xuelian Ma  - Zhen Su's Lab -  China Agricultural University

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