PH01002902G0120's details annotation
1.Annotation
ICBR annotation: ribosomal protein S2, putative, expressed
Blast result AT3G04770 : 6.00E-106
Blast annotation: 40s ribosomal protein SA B
2.Location
Scaffold: PH01002902
Strand: -
| Region | Start | End |
| gene | 130835 | 134636 |
| mRNA | 130835 | 134636 |
| exon | 130835 | 132400 |
| exon | 132790 | 132973 |
| exon | 133082 | 133279 |
| exon | 133368 | 133630 |
| exon | 134395 | 134636 |
| CDS | 132282 | 132400 |
| CDS | 132790 | 132973 |
| CDS | 133082 | 133279 |
| CDS | 133368 | 133630 |
| CDS | 134395 | 134536 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00318.19 | Ribosomal_S2 | 21 | 116 |
| PF00318.19 | Ribosomal_S2 | 120 | 185 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Ribosome | small subunit ribosomal protein SAe | ko03011 | K02998 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003735 | structural constituent of ribosome |
| GO:0005622 | intracellular |
| GO:0005840 | ribosome |
| GO:0006412 | translation |
| GO:0015935 | small ribosomal subunit |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.