Annotation of co-expression genes

PH01002908G0260's details annotation

1.Annotation

ICBR annotation: UDP-glucose glycoprotein glucosyltransferase 1 precursor, putative, expressed

Blast result AT1G71220 : 0
Blast annotation: UDP-glucose:glycoprotein glucosyltransferases;transferases, transferring hexosyl groups;transferases, transferring glycosyl groups

2.Location

Scaffold: PH01002908
Strand: -

RegionStartEnd
gene145163154000
mRNA145163154000
exon145163145598
exon145719145886
exon146519146633
exon146833147035
exon147440147514
exon147678147780
exon148148148209
exon148483148569
exon149054149146
exon149221149534
exon149605149693
exon149785149915
exon149988150044
exon151900152012
exon153249154000
CDS145428145598
CDS145719145886
CDS146519146633
CDS146833147035
CDS147440147514
CDS147678147780
CDS148148148209
CDS148483148569
CDS149054149146
CDS149221149534
CDS149605149693
CDS149785149915
CDS149988150044
CDS151900152012
CDS153249153405

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
GlycosylTransferasesGT24

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF06427.10UDP-g_GGTase86275

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003980UDP-glucose:glycoprotein glucosyltransferase activity
GO:0006486protein glycosylation

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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