Annotation of co-expression genes

PH01002913G0170's details annotation

1.Annotation

ICBR annotation: hypothetical_protein

Blast result AT1G16480 : 0.00E+00
Blast annotation: Tetratricopeptide repeat (TPR)-like superfamily protein

2.Location

Scaffold: PH01002913
Strand: +

RegionStartEnd
gene108055113964
mRNA108055113964
exon108055108426
exon109230112459
exon112751113964
CDS108278108426
CDS109230112459
CDS112751113319

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF01535.19PPR296323
PF01535.19PPR324354
PF01535.19PPR397422
PF13041.5PPR_2423471
PF01535.19PPR499525
PF01535.19PPR527554
PF01535.19PPR600624
PF13812.5PPR_3625664
PF01535.19PPR702726
PF13041.5PPR_2727764
PF01535.19PPR802822
PF13041.5PPR_2832876
PF01535.19PPR906927
PF14432.5DYW_deaminase10031126

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005515protein binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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