Annotation of co-expression genes

PH01002923G0200's details annotation

1.Annotation

ICBR annotation: prefoldin, putative, expressed

Blast result AT5G42570 : 6.00E-51
Blast annotation: B-cell receptor-associated 31-like

2.Location

Scaffold: PH01002923
Strand: -

RegionStartEnd
gene133322134287
mRNA133322134287
exon133322134287
CDS133693134010

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001292LSD Transcription_Regulator(from PlantTFDB)
C2C2-LSD Transcription_Regulator(from iTAK)
CAMK_CDPK (from iTAK)
vesicle docking involved in exocytosis,
endoplasmic reticulum,
Protein_processing_in_endoplasmic_reticulum
coexpression networkCFinderM001293CAMK_CDPK (from iTAK)
vesicle docking involved in exocytosis,
Protein_processing_in_endoplasmic_reticulum

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF05529.11Bap3193192

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Protein processing in endoplasmic reticulumB-cell receptor-associated protein 31ko04141K14009

10.Gene Ontology

GO AccessionGO Annotation
GO:0005783endoplasmic reticulum
GO:0006886intracellular protein transport
GO:0016021integral to membrane

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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