Annotation of co-expression genes

PH01002933G0170's details annotation

1.Annotation

ICBR annotation: zinc finger family protein, putative, expressed

Blast result AT4G11680 : 3.00E-111
Blast annotation: Zinc finger, C3HC4 type (RING finger) family protein

2.Location

Scaffold: PH01002933
Strand: +

RegionStartEnd
gene118160124685
mRNA118160124685
exon118160119079
exon122193122312
exon122413122545
exon123282123425
exon124410124685
CDS118547119079
CDS122193122312
CDS122413122545
CDS123282123425
CDS124410124586

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001297PLATZ Transcription_Regulator(from iTAK)
translational termination,
iron-sulfur cluster assembly,
mRNA_surveillance_pathway
coexpression networkCFinderM001443Fatty_acid_biosynthesis
3-oxoacyl-[acyl-carrier-protein] synthase activity,
translational termination,
mRNA_surveillance_pathway
translation release factor activity, codon specific,
lipid biosynthetic process,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF13639.5zf-RING_2310353

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005515protein binding
GO:0008270zinc ion binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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