PH01002944G0250's details annotation
1.Annotation
ICBR annotation: small G protein family protein, putative, expressed
Blast result AT5G61530 : 1.00E-119
Blast annotation: small G protein family protein / RhoGAP family protein
2.Location
Scaffold: PH01002944
Strand: -
| Region | Start | End |
| gene | 168697 | 179068 |
| mRNA | 168697 | 179068 |
| exon | 168697 | 170251 |
| exon | 170950 | 171106 |
| exon | 172991 | 173235 |
| exon | 173331 | 173408 |
| exon | 173492 | 173590 |
| exon | 174122 | 174140 |
| exon | 174235 | 174297 |
| exon | 174781 | 175025 |
| exon | 175313 | 175393 |
| exon | 176771 | 179068 |
| CDS | 170109 | 170251 |
| CDS | 170950 | 171106 |
| CDS | 172991 | 173235 |
| CDS | 173331 | 173408 |
| CDS | 173492 | 173590 |
| CDS | 174122 | 174140 |
| CDS | 174235 | 174297 |
| CDS | 174781 | 175025 |
| CDS | 175313 | 175393 |
| CDS | 176771 | 176804 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000420 | Protein_export defense response, signal recognition particle, 7S RNA binding, ADP_binding SRP-dependent cotranslational protein targeting to membrane, G2-like Transcription_Regulator(from PlantTFDB) GARP-G2-like Transcription_Regulator(from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00620.26 | RhoGAP | 167 | 307 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005622 | intracellular |
| GO:0007165 | signal transduction |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.