PH01002950G0020's details annotation
1.Annotation
ICBR annotation: ZIM motif family protein, expressed
Blast result AT3G17860 : 5.90E-20
Blast annotation: jasmonate-zim-domain protein 3
2.Location
Scaffold: PH01002950
Strand: +
| Region | Start | End |
| gene | 6339 | 11050 |
| mRNA | 6339 | 11050 |
| exon | 6339 | 7462 |
| exon | 7958 | 8142 |
| exon | 8226 | 8488 |
| exon | 8564 | 8666 |
| exon | 8872 | 9232 |
| exon | 9340 | 9397 |
| exon | 9542 | 11050 |
| CDS | 7396 | 7462 |
| CDS | 7958 | 8142 |
| CDS | 8226 | 8488 |
| CDS | 8564 | 8666 |
| CDS | 8872 | 9232 |
| CDS | 9340 | 9397 |
| CDS | 9542 | 9740 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001646 | Tify Transcription_Regulator(from iTAK) mRNA_catabolic_process polyribonucleotide_nucleotidyltransferase_activity 3'-5'-exoribonuclease activity, RNA processing, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | Tify |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF06200.13 | tify | 183 | 215 |
| PF09425.9 | CCT_2 | 329 | 353 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Plant hormone signal transduction | jasmonate ZIM domain-containing protein | ko04075 | K13464 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.