PH01002954G0060's details annotation
1.Annotation
ICBR annotation: oxidoreductase, short chain dehydrogenase/reductase family domain containing family, expressed
Blast result AT4G11410 : 5.60E-93
Blast annotation: NAD(P)-binding Rossmann-fold superfamily protein
2.Location
Scaffold: PH01002954
Strand: -
| Region | Start | End |
| gene | 29691 | 35032 |
| mRNA | 29691 | 35032 |
| exon | 29691 | 29902 |
| exon | 30302 | 30348 |
| exon | 30720 | 30804 |
| exon | 31731 | 32011 |
| exon | 32665 | 32744 |
| exon | 33921 | 34152 |
| exon | 34247 | 35032 |
| CDS | 29744 | 29902 |
| CDS | 30302 | 30348 |
| CDS | 30720 | 30804 |
| CDS | 31731 | 32011 |
| CDS | 32665 | 32744 |
| CDS | 33921 | 34152 |
| CDS | 34247 | 34355 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000489 | SAGA-type_complex cell death, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00106.24 | adh_short | 2 | 123 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008152 | metabolic process |
| GO:0016491 | oxidoreductase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.