PH01002954G0180's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result - : -
Blast annotation: -
2.Location
Scaffold: PH01002954
Strand: +
| Region | Start | End |
| gene | 111329 | 111856 |
| mRNA | 111329 | 111856 |
| exon | 111329 | 111856 |
| CDS | 111549 | 111752 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000087 | AP2/ERF-RAV Transcription_Regulator(from iTAK) RAV Transcription_Regulator(from PlantTFDB) Valine,_leucine_and_isoleucine_degradation Chloroalkane_and_chloroalkene_degradation Lysine_degradation Tryptophan_metabolism Propanoate_metabolism beta-Alanine_metabolism Limonene_and_pinene_degradation Histidine_metabolism Pentose_and_glucuronate_interconversions Fatty_acid_metabolism Glycerolipid_metabolism Ascorbate_and_aldarate_metabolism antiporter activity, oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, drug transmembrane transporter activity, |
| coexpression network | CFinderM000165 | oxidoreductase activity, acting on CH-OH group of donors, flavin adenine dinucleotide binding, oxidation-reduction process, vesicle docking involved in exocytosis, Valine,_leucine_and_isoleucine_degradation oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, Histidine_metabolism Limonene_and_pinene_degradation Propanoate_metabolism Tryptophan_metabolism Lysine_degradation Chloroalkane_and_chloroalkene_degradation beta-Alanine_metabolism Fatty_acid_metabolism Glycerolipid_metabolism Ascorbate_and_aldarate_metabolism Pentose_and_glucuronate_interconversions |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.