PH01002960G0070's details annotation
1.Annotation
ICBR annotation: cleavage and polyadenylation specificity factor, putative, expressed
Blast result AT3G11960 : 8.80E-45
Blast annotation: Cleavage and polyadenylation specificity factor (CPSF) A subunit protein
2.Location
Scaffold: PH01002960
Strand: +
| Region | Start | End |
| gene | 39719 | 46255 |
| mRNA | 39719 | 46255 |
| exon | 39719 | 42161 |
| exon | 42258 | 42463 |
| exon | 42788 | 42943 |
| exon | 43060 | 43198 |
| exon | 43625 | 43701 |
| exon | 44079 | 44200 |
| exon | 45798 | 45882 |
| exon | 46219 | 46255 |
| CDS | 41981 | 42161 |
| CDS | 42258 | 42463 |
| CDS | 42788 | 42943 |
| CDS | 43060 | 43198 |
| CDS | 43625 | 43701 |
| CDS | 44079 | 44200 |
| CDS | 45798 | 45882 |
| CDS | 46219 | 46242 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000515 | intracellular, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03178.14 | CPSF_A | 143 | 299 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003676 | nucleic acid binding |
| GO:0005634 | nucleus |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.