PH01002963G0080's details annotation
1.Annotation
ICBR annotation: OTU-like cysteine protease family protein, putative, expressed
Blast result AT3G02070 : 7.00E-47
Blast annotation: Cysteine proteinases superfamily protein
2.Location
Scaffold: PH01002963
Strand: +
| Region | Start | End |
| gene | 24820 | 28141 |
| mRNA | 24820 | 28141 |
| exon | 24820 | 25085 |
| exon | 25492 | 25666 |
| exon | 25852 | 25925 |
| exon | 26890 | 26944 |
| exon | 27046 | 27120 |
| exon | 27380 | 27503 |
| exon | 27840 | 28141 |
| CDS | 25054 | 25085 |
| CDS | 25492 | 25666 |
| CDS | 25852 | 25925 |
| CDS | 26890 | 26944 |
| CDS | 27046 | 27120 |
| CDS | 27380 | 27503 |
| CDS | 27840 | 27982 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000745 | GMP synthase (glutamine-hydrolyzing) activity, pyrophosphatase_activity CMGC_GSK (from iTAK) protein-arginine_deiminase_activity |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.