PH01002966G0010's details annotation
1.Annotation
ICBR annotation: DENN domain containing protein, expressed
Blast result AT2G20320 : 7.50E-27
Blast annotation: DENN (AEX-3) domain-containing protein
2.Location
Scaffold: PH01002966
Strand: -
| Region | Start | End |
| gene | 10049 | 29683 |
| mRNA | 10049 | 29683 |
| exon | 10049 | 10212 |
| exon | 11792 | 11857 |
| exon | 12656 | 12790 |
| exon | 13061 | 13138 |
| exon | 13937 | 14215 |
| exon | 16770 | 16820 |
| exon | 17420 | 17482 |
| exon | 18291 | 18380 |
| exon | 18517 | 18714 |
| exon | 18798 | 18924 |
| exon | 19329 | 19720 |
| exon | 19752 | 20034 |
| exon | 20996 | 21099 |
| exon | 21596 | 21640 |
| exon | 21876 | 21935 |
| exon | 22662 | 22745 |
| exon | 22945 | 23136 |
| exon | 25902 | 25988 |
| exon | 26949 | 29683 |
| CDS | 10147 | 10212 |
| CDS | 11792 | 11857 |
| CDS | 12656 | 12790 |
| CDS | 13061 | 13138 |
| CDS | 13937 | 14215 |
| CDS | 16770 | 16820 |
| CDS | 17420 | 17482 |
| CDS | 18291 | 18380 |
| CDS | 18517 | 18714 |
| CDS | 18798 | 18924 |
| CDS | 19329 | 19720 |
| CDS | 19752 | 20034 |
| CDS | 20996 | 21099 |
| CDS | 21596 | 21640 |
| CDS | 21876 | 21935 |
| CDS | 22662 | 22745 |
| CDS | 22945 | 23136 |
| CDS | 25902 | 25988 |
| CDS | 26949 | 27251 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001432 | RLK-Pelle_CR4L (from iTAK) ubiquitin ligase complex, Ubiquitin_mediated_proteolysis regulation of ARF GTPase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.