PH01002967G0190's details annotation
1.Annotation
ICBR annotation: Homeobox domain containing protein, expressed
Blast result AT4G08150 : 1.90E-85
Blast annotation: KNOTTED-like from Arabidopsis thaliana
2.Location
Scaffold: PH01002967
Strand: -
| Region | Start | End |
| gene | 153073 | 154510 |
| mRNA | 153073 | 154510 |
| exon | 153073 | 153515 |
| exon | 153721 | 154510 |
| CDS | 153309 | 153515 |
| CDS | 153721 | 154008 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | HB-KNOX |
| Transcription_Regulator(from PlantTFDB) | TALE |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03790.12 | KNOX1 | 80 | 121 |
| PF03791.12 | KNOX2 | 132 | 176 |
| PF03789.12 | ELK | 226 | 247 |
| PF05920.10 | Homeobox_KN | 266 | 305 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0003700 | sequence-specific DNA binding transcription factor activity |
| GO:0005634 | nucleus |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0043565 | sequence-specific DNA binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.