PH01002968G0090's details annotation
1.Annotation
ICBR annotation: histone deacetylase, putative, expressed
Blast result AT5G61050 : 7.80E-36
Blast annotation: histone deacetylase-related / HD-related
2.Location
Scaffold: PH01002968
Strand: -
| Region | Start | End |
| gene | 45421 | 51473 |
| mRNA | 45421 | 51473 |
| exon | 45421 | 47245 |
| exon | 47337 | 47593 |
| exon | 49114 | 49148 |
| exon | 49283 | 49347 |
| exon | 50065 | 50221 |
| exon | 50325 | 50518 |
| exon | 50611 | 50617 |
| exon | 50880 | 51473 |
| CDS | 46982 | 47245 |
| CDS | 47337 | 47593 |
| CDS | 49114 | 49148 |
| CDS | 49283 | 49347 |
| CDS | 50065 | 50221 |
| CDS | 50325 | 50518 |
| CDS | 50611 | 50617 |
| CDS | 50880 | 51340 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000152 | lipid metabolic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.