PH01002968G0110's details annotation
1.Annotation
ICBR annotation: histone deacetylase, putative, expressed
Blast result AT5G61060 : 4.00E-106
Blast annotation: histone deacetylase 5
2.Location
Scaffold: PH01002968
Strand: -
| Region | Start | End |
| gene | 56541 | 62273 |
| mRNA | 56541 | 62273 |
| exon | 56541 | 56624 |
| exon | 56851 | 57204 |
| exon | 57376 | 57476 |
| exon | 58976 | 59187 |
| exon | 60534 | 60646 |
| exon | 60812 | 60958 |
| exon | 61079 | 61280 |
| exon | 61462 | 61671 |
| exon | 61839 | 62273 |
| CDS | 56556 | 56624 |
| CDS | 56851 | 57204 |
| CDS | 57376 | 57476 |
| CDS | 58976 | 59187 |
| CDS | 60534 | 60646 |
| CDS | 60812 | 60958 |
| CDS | 61079 | 61280 |
| CDS | 61462 | 61671 |
| CDS | 61839 | 61993 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00850.18 | Hist_deacetyl | 30 | 348 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.