Annotation of co-expression genes

PH01002997G0140's details annotation

1.Annotation

ICBR annotation: desaturase/cytochrome b5 protein, putative, expressed

Blast result AT2G46210 : 1.00E-162
Blast annotation: Fatty acid/sphingolipid desaturase

2.Location

Scaffold: PH01002997
Strand: -

RegionStartEnd
gene99686103478
mRNA99686103478
exon99686103478
CDS101226102611

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00173.27Cyt-b52493
PF00487.23FA_desaturase149418

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005506iron ion binding
GO:0006629lipid metabolic process
GO:0006633fatty acid biosynthetic process
GO:0016717oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water
GO:0020037heme binding
GO:0055114oxidation-reduction process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.