PH01002998G0240's details annotation
1.Annotation
ICBR annotation: no apical meristem protein, putative, expressed
Blast result AT5G09330 : 3.20E-69
Blast annotation: NAC domain containing protein 82
2.Location
Scaffold: PH01002998
Strand: +
| Region | Start | End |
| gene | 119417 | 123802 |
| mRNA | 119417 | 123802 |
| exon | 119417 | 119932 |
| exon | 120211 | 120488 |
| exon | 121423 | 121812 |
| exon | 121904 | 122190 |
| exon | 122660 | 123802 |
| CDS | 119776 | 119932 |
| CDS | 120211 | 120488 |
| CDS | 121423 | 121812 |
| CDS | 121904 | 122190 |
| CDS | 122660 | 122825 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000622 | exocyst, SOS_response DNA-dependent ATPase activity, single-stranded DNA binding, DNA metabolic process, exocytosis, RLK-Pelle_RLCK-VIIa-2 (from iTAK) NAC Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | NAC |
| Transcription_Regulator(from PlantTFDB) | NAC |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02365.14 | NAM | 7 | 133 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0006355 | regulation of transcription, DNA-dependent |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.