PH01003012G0040's details annotation
1.Annotation
ICBR annotation: DGCR14, putative, expressed
Blast result AT3G07790 : 7.00E-145
Blast annotation: DGCR14-related
2.Location
Scaffold: PH01003012
Strand: -
| Region | Start | End |
| gene | 17261 | 21034 |
| mRNA | 17261 | 21034 |
| exon | 17261 | 21034 |
| CDS | 19144 | 20634 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001264 | cis-Golgi network, Rab GDP-dissociation inhibitor activity, C2H2 Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM001313 | spliceosomal complex, aminopeptidase activity, ubiquitin thiolesterase activity, nuclear mRNA splicing, via spliceosome, Spliceosome |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF09751.8 | Es2 | 49 | 441 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.