PH01003016G0040's details annotation
1.Annotation
ICBR annotation: PSF3 - Putative GINS complex subunit, expressed
Blast result AT3G55490 : 2.70E-60
Blast annotation: GINS complex protein
2.Location
Scaffold: PH01003016
Strand: -
| Region | Start | End |
| gene | 32904 | 37181 |
| mRNA | 32904 | 37181 |
| exon | 32904 | 33878 |
| exon | 34599 | 34691 |
| exon | 34952 | 35055 |
| exon | 35430 | 35501 |
| exon | 35579 | 37181 |
| CDS | 33782 | 33878 |
| CDS | 34599 | 34691 |
| CDS | 34952 | 35055 |
| CDS | 35430 | 35501 |
| CDS | 35579 | 35623 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF05916.10 | Sld5 | 46 | 132 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.