PH01003030G0180's details annotation
1.Annotation
ICBR annotation: selT-like protein precursor, putative, expressed
Blast result AT5G58640 : 2.50E-59
Blast annotation: Selenoprotein, Rdx type
2.Location
Scaffold: PH01003030
Strand: +
| Region | Start | End |
| gene | 91678 | 97547 |
| mRNA | 91678 | 97547 |
| exon | 91678 | 93693 |
| exon | 93794 | 93867 |
| exon | 95595 | 95910 |
| exon | 96315 | 97547 |
| CDS | 93508 | 93693 |
| CDS | 93794 | 93867 |
| CDS | 95595 | 95910 |
| CDS | 96315 | 96431 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF10262.8 | Rdx | 75 | 212 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008430 | selenium binding |
| GO:0045454 | cell redox homeostasis |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.