PH01003033G0180's details annotation
1.Annotation
ICBR annotation: amino acid permease family protein, putative, expressed
Blast result AT2G01170 : 7.00E-170
Blast annotation: bidirectional amino acid transporter 1
2.Location
Scaffold: PH01003033
Strand: +
| Region | Start | End |
| gene | 141934 | 145869 |
| mRNA | 141934 | 145869 |
| exon | 141934 | 142233 |
| exon | 143774 | 143792 |
| exon | 143889 | 144108 |
| exon | 144253 | 144434 |
| exon | 144524 | 144813 |
| exon | 144938 | 145067 |
| exon | 145165 | 145869 |
| CDS | 142043 | 142233 |
| CDS | 143774 | 143792 |
| CDS | 143889 | 144108 |
| CDS | 144253 | 144434 |
| CDS | 144524 | 144813 |
| CDS | 144938 | 145067 |
| CDS | 145165 | 145512 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13520.5 | AA_permease_2 | 62 | 432 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003333 | amino acid transmembrane transport |
| GO:0015171 | amino acid transmembrane transporter activity |
| GO:0016020 | membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.