PH01003040G0200's details annotation
1.Annotation
ICBR annotation: C2 domain containing protein, putative, expressed
Blast result AT3G14590 : 3.00E-111
Blast annotation: Calcium-dependent lipid-binding (CaLB domain) family protein
2.Location
Scaffold: PH01003040
Strand: -
| Region | Start | End |
| gene | 121462 | 128930 |
| mRNA | 121462 | 128930 |
| exon | 121462 | 122709 |
| exon | 123215 | 123335 |
| exon | 123608 | 123791 |
| exon | 123863 | 123958 |
| exon | 124361 | 124409 |
| exon | 124538 | 124579 |
| exon | 124683 | 124835 |
| exon | 125425 | 125571 |
| exon | 126290 | 126364 |
| exon | 127750 | 128930 |
| CDS | 121888 | 122709 |
| CDS | 123215 | 123335 |
| CDS | 123608 | 123791 |
| CDS | 123863 | 123958 |
| CDS | 124361 | 124409 |
| CDS | 124538 | 124579 |
| CDS | 124683 | 124835 |
| CDS | 125425 | 125571 |
| CDS | 126290 | 126364 |
| CDS | 127750 | 127875 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00168.29 | C2 | 212 | 312 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.