PH01003057G0020's details annotation
1.Annotation
ICBR annotation: PX domain containing protein, putative, expressed
Blast result AT1G15240 : 3.00E-109
Blast annotation: Phox-associated domain;Phox-like;Sorting nexin, C-terminal
2.Location
Scaffold: PH01003057
Strand: +
| Region | Start | End |
| gene | 8404 | 26961 |
| mRNA | 8404 | 26961 |
| exon | 8404 | 10081 |
| exon | 10847 | 11252 |
| exon | 11348 | 11525 |
| exon | 12054 | 12193 |
| exon | 12271 | 13537 |
| exon | 13582 | 13657 |
| exon | 16261 | 16346 |
| exon | 16520 | 16599 |
| exon | 16748 | 16883 |
| exon | 17049 | 17208 |
| exon | 17484 | 17566 |
| exon | 18458 | 18593 |
| exon | 22549 | 22662 |
| exon | 24275 | 26961 |
| CDS | 9964 | 10081 |
| CDS | 10847 | 11252 |
| CDS | 11348 | 11525 |
| CDS | 12054 | 12193 |
| CDS | 12271 | 13537 |
| CDS | 13582 | 13657 |
| CDS | 16261 | 16346 |
| CDS | 16520 | 16599 |
| CDS | 16748 | 16883 |
| CDS | 17049 | 17208 |
| CDS | 17484 | 17566 |
| CDS | 18458 | 18593 |
| CDS | 22549 | 22662 |
| CDS | 24275 | 25359 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | OFP |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02194.14 | PXA | 113 | 289 |
| PF08628.11 | Nexin_C | 782 | 912 |
| PF04844.12 | Ovate | 1294 | 1351 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.