PH01003062G0160's details annotation
1.Annotation
ICBR annotation: formin, putative, expressed
Blast result AT3G05470 : 4.00E-126
Blast annotation: Actin-binding FH2 (formin homology 2) family protein
2.Location
Scaffold: PH01003062
Strand: -
| Region | Start | End |
| gene | 105330 | 108943 |
| mRNA | 105330 | 108943 |
| exon | 105330 | 106574 |
| exon | 106652 | 106887 |
| exon | 106971 | 107161 |
| exon | 107248 | 108943 |
| CDS | 105858 | 106574 |
| CDS | 106652 | 106887 |
| CDS | 106971 | 107161 |
| CDS | 107248 | 108776 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000118 |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02181.22 | FH2 | 474 | 866 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003779 | actin binding |
| GO:0016043 | cellular component organization |
| GO:0030036 | actin cytoskeleton organization |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.