PH01003083G0090's details annotation
1.Annotation
ICBR annotation: haloacid dehalogenase-like hydrolase domain-containing protein 3, putative, expressed
Blast result AT1G14310 : 1.30E-82
Blast annotation: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
2.Location
Scaffold: PH01003083
Strand: +
| Region | Start | End |
| gene | 88586 | 91858 |
| mRNA | 88586 | 91858 |
| exon | 88586 | 89547 |
| exon | 89688 | 89770 |
| exon | 89979 | 90062 |
| exon | 90646 | 90721 |
| exon | 90879 | 90951 |
| exon | 91073 | 91146 |
| exon | 91346 | 91439 |
| exon | 91580 | 91858 |
| CDS | 89304 | 89547 |
| CDS | 89688 | 89770 |
| CDS | 89979 | 90062 |
| CDS | 90646 | 90721 |
| CDS | 90879 | 90951 |
| CDS | 91073 | 91146 |
| CDS | 91346 | 91439 |
| CDS | 91580 | 91649 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13419.5 | HAD_2 | 128 | 242 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008152 | metabolic process |
| GO:0008967 | phosphoglycolate phosphatase activity |
| GO:0016787 | hydrolase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.