Annotation of co-expression genes

PH01003097G0210's details annotation

1.Annotation

ICBR annotation: AAA-type ATPase family protein, putative, expressed

Blast result AT4G02480 : 0
Blast annotation: AAA-type ATPase family protein

2.Location

Scaffold: PH01003097
Strand: +

RegionStartEnd
gene109237119593
mRNA109237119593
exon109237109604
exon109692109789
exon109841110170
exon111648111714
exon111816111907
exon112417112459
exon112710112770
exon113534113682
exon113814113884
exon113960114130
exon114215114286
exon114413114514
exon115281115368
exon115450115549
exon115648115723
exon115962116141
exon116673116795
exon116869116952
exon117073117257
exon117341117479
exon117578117637
exon117914118018
exon118644119593
CDS109358109604
CDS109692109789
CDS109841110170
CDS111648111714
CDS111816111907
CDS112417112459
CDS112710112770
CDS113534113682
CDS113814113884
CDS113960114130
CDS114215114286
CDS114413114514
CDS115281115368
CDS115450115549
CDS115648115723
CDS115962116141
CDS116673116795
CDS116869116952
CDS117073117257
CDS117341117479
CDS117578117637
CDS117914118018
CDS118644118757

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF07727.13RVT_2284
PF00004.28AAA654783

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0000166nucleotide binding
GO:0005524ATP binding
GO:0017111nucleoside-triphosphatase activity

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.