Annotation of co-expression genes

PH01003099G0060's details annotation

1.Annotation

ICBR annotation: tyrosine protein kinase domain containing protein, putative, expressed

Blast result AT2G05940 : 1.40E-97
Blast annotation: Protein kinase superfamily protein

2.Location

Scaffold: PH01003099
Strand: +

RegionStartEnd
gene5746060935
mRNA5746060935
exon5746057815
exon5948659622
exon6004960935
CDS5765357815
CDS5948659622
CDS6004960678

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000663protein neddylation,
RLK-Pelle_RLCK-VIIa-2 (from iTAK)
chromosome,
DNA topological change,
DNA metabolic process,
apoplast,
cellular protein modification process,
Ubiquitin_mediated_proteolysis
small protein activating enzyme activity,
DNA topoisomerase (ATP-hydrolyzing) activity,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF07714.16Pkinase_Tyr9237

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004672protein kinase activity
GO:0004674protein serine/threonine kinase activity
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0016772transferase activity, transferring phosphorus-containing groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.