Annotation of co-expression genes

PH01003106G0200's details annotation

1.Annotation

ICBR annotation: serine/threonine-protein kinase, putative, expressed

Blast result AT1G01540 : 1.00E-120
Blast annotation: Protein kinase superfamily protein

2.Location

Scaffold: PH01003106
Strand: +

RegionStartEnd
gene157307162764
mRNA157307162764
exon157307159224
exon159444159571
exon159997160101
exon160195160317
exon160400160570
exon160649160778
exon160867161011
exon161148161205
exon161284161413
exon161502161711
exon162235162764
CDS158946159224
CDS159444159571
CDS159997160101
CDS160195160317
CDS160400160570
CDS160649160778
CDS160867161011
CDS161148161205
CDS161284161413
CDS161502161711
CDS162235162378

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000899glucose-6-phosphate dehydrogenase activity,
glucose metabolic process,
galactosyltransferase activity,
NADP binding,
Glutathione_metabolism
Pentose_phosphate_pathway
Glycine,_serine_and_threonine_metabolism
Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
Glycosaminoglycan_biosynthesis_-_chondroitin_sulfate_/_dermatan_sulfate
Glycosaminoglycan_biosynthesis_-_heparan_sulfate_/_heparin
protein glycosylation,
phosphoserine phosphatase activity,
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides,
chorismate mutase activity,
chorismate metabolic process,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00069.24Pkinase104308
PF00069.24Pkinase366481

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004672protein kinase activity
GO:0004674protein serine/threonine kinase activity
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0016772transferase activity, transferring phosphorus-containing groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.