PH01003108G0020's details annotation
1.Annotation
ICBR annotation: OsWRKY1v2 - Superfamily of TFs having WRKY and zinc finger domains, expressed
Blast result AT1G62300 : 1.20E-73
Blast annotation: WRKY family transcription factor
2.Location
Scaffold: PH01003108
Strand: +
| Region | Start | End |
| gene | 11957 | 17662 |
| mRNA | 11957 | 17662 |
| exon | 11957 | 13177 |
| exon | 13273 | 13341 |
| exon | 13454 | 13627 |
| exon | 13763 | 14077 |
| exon | 14184 | 14297 |
| exon | 14338 | 14377 |
| exon | 14425 | 17662 |
| CDS | 12992 | 13177 |
| CDS | 13273 | 13341 |
| CDS | 13454 | 13627 |
| CDS | 13763 | 14077 |
| CDS | 14184 | 14297 |
| CDS | 14338 | 14377 |
| CDS | 14425 | 15116 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000075 | regulation of transcription, DNA-dependent, sequence-specific DNA binding transcription factor activity, integral to membrane, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | WRKY |
| Transcription_Regulator(from PlantTFDB) | WRKY |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03106.14 | WRKY | 251 | 286 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003700 | sequence-specific DNA binding transcription factor activity |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0043565 | sequence-specific DNA binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.