PH01003109G0250's details annotation
1.Annotation
ICBR annotation: decarboxylase, putative, expressed
Blast result AT1G27980 : 3.10E-58
Blast annotation: dihydrosphingosine phosphate lyase
2.Location
Scaffold: PH01003109
Strand: -
| Region | Start | End |
| gene | 138031 | 147170 |
| mRNA | 138031 | 147170 |
| exon | 138031 | 138299 |
| exon | 138450 | 138528 |
| exon | 138622 | 138768 |
| exon | 139218 | 139442 |
| exon | 140123 | 140182 |
| exon | 140322 | 140473 |
| exon | 141072 | 141117 |
| exon | 141229 | 141445 |
| exon | 141484 | 141591 |
| exon | 141710 | 141728 |
| exon | 142116 | 142242 |
| exon | 146465 | 147170 |
| CDS | 138177 | 138299 |
| CDS | 138450 | 138528 |
| CDS | 138622 | 138768 |
| CDS | 139218 | 139442 |
| CDS | 140123 | 140182 |
| CDS | 140322 | 140473 |
| CDS | 141072 | 141117 |
| CDS | 141229 | 141445 |
| CDS | 141484 | 141591 |
| CDS | 141710 | 141728 |
| CDS | 142116 | 142242 |
| CDS | 146465 | 146661 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0030170 | pyridoxal phosphate binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.