PH01003113G0100's details annotation 1.Annotation ICBR annotation: amidase, putative, expressed
Blast result AT3G25660 : 5.00E-179 Blast annotation: Amidase family protein 2.Location Scaffold: PH01003113 Strand: + Region | Start | End | gene | 59180 | 64856 | mRNA | 59180 | 64856 | exon | 59180 | 60073 | exon | 60393 | 60704 | exon | 61282 | 61461 | exon | 61578 | 61672 | exon | 61758 | 61833 | exon | 62786 | 62879 | exon | 62930 | 63006 | exon | 63217 | 63330 | exon | 63510 | 64856 | CDS | 59531 | 60073 | CDS | 60393 | 60704 | CDS | 61282 | 61461 | CDS | 61578 | 61672 | CDS | 61758 | 61833 | CDS | 62786 | 62879 | CDS | 62930 | 63006 | CDS | 63217 | 63330 | CDS | 63510 | 63593 |
UCSC genome browser 3.Network  4.Functional module Method | Module ID | Function Annotation | coexpression network | CFinderM000559 | regulation of cell shape, cell division, Ino80_complex Aminoacyl-tRNA_biosynthesis carbon-nitrogen ligase activity, with glutamine as amido-N-donor, ligase activity, chromatin binding,
| coexpression network | CFinderM000928 | carbon-nitrogen ligase activity, with glutamine as amido-N-donor, Aminoacyl-tRNA_biosynthesis Jumonji Transcription_Regulator(from iTAK) translation,
| coexpression network | CFinderM001151 | Aminoacyl-tRNA_biosynthesis carbon-nitrogen ligase activity, with glutamine as amido-N-donor, Jumonji Transcription_Regulator(from iTAK) translation,
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5.Cis-elements Details in 3kb promoter region 6.Expression profilings
7.Gene family
8.Protein domain Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start | PF01425.20 | Amidase | 64 | 406 | PF01425.20 | Amidase | 402 | 501 |
9.KEGG Pathway Pathway | KEGG Ortholog | Pathway ID | KO | Aminoacyl-tRNA biosynthesis | aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A[EC:6.3.5.6;EC:6.3.5.7] | ko00970 | K02433 |
10.Gene Ontology GO Accession | GO Annotation | GO:0006412 | translation | GO:0016884 | carbon-nitrogen ligase activity, with glutamine as amido-N-donor |
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