PH01003113G0110's details annotation
1.Annotation
ICBR annotation: vacuolar ATP synthase subunit D 1, putative, expressed
Blast result AT3G58730 : 7.00E-109
Blast annotation: vacuolar ATP synthase subunit D (VATD) / V-ATPase D subunit / vacuolar proton pump D subunit (VATPD)
2.Location
Scaffold: PH01003113
Strand: -
| Region | Start | End |
| gene | 67494 | 68971 |
| mRNA | 67494 | 68971 |
| exon | 67494 | 68971 |
| CDS | 68036 | 68845 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000476 | Oxidative_phosphorylation mitochondrial envelope, mitochondrial_respiratory_chain_complex_III vesicle docking involved in exocytosis, mitochondrial electron transport, ubiquinol to cytochrome c, ATPase activity, coupled to transmembrane movement of substances, ubiquitin thiolesterase activity, Endocytosis Phagosome |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01813.16 | ATP-synt_D | 18 | 216 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Oxidative phosphorylation | V-type H+-transporting ATPase subunit D [EC:3.6.3.14] | ko00190 | K02149 |
| Phagosome | V-type H+-transporting ATPase subunit D [EC:3.6.3.14] | ko04145 | K02149 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0042626 | ATPase activity, coupled to transmembrane movement of substances |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.