Annotation of co-expression genes

PH01003134G0010's details annotation

1.Annotation

ICBR annotation: expressed_protein

Blast result AT3G06560 : 3.60E-39
Blast annotation: poly(A) polymerase 3

2.Location

Scaffold: PH01003134
Strand: -

RegionStartEnd
gene939115812
mRNA939115812
exon93919943
exon1007310237
exon1169611992
exon1365515812
CDS97889943
CDS1007310237
CDS1169611992
CDS1365513774

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF04928.16PAP_central39153
PF04926.14PAP_RNA-bind159197

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003723RNA binding
GO:0004652polynucleotide adenylyltransferase activity
GO:0005634nucleus
GO:0016779nucleotidyltransferase activity
GO:0031123RNA 3'-end processing
GO:0043631RNA polyadenylation

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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