PH01003147G0100's details annotation
1.Annotation
ICBR annotation: dof zinc finger domain containing protein, putative, expressed
Blast result AT5G62940 : 4.40E-37
Blast annotation: Dof-type zinc finger DNA-binding family protein
2.Location
Scaffold: PH01003147
Strand: +
| Region | Start | End |
| gene | 99790 | 102708 |
| mRNA | 99790 | 102708 |
| exon | 99790 | 99960 |
| exon | 101790 | 101923 |
| exon | 102292 | 102708 |
| CDS | 99910 | 99960 |
| CDS | 101790 | 101923 |
| CDS | 102292 | 102697 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | C2C2-Dof |
| Transcription_Regulator(from PlantTFDB) | Dof |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02701.14 | zf-Dof | 56 | 113 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.