PH01003155G0210's details annotation
1.Annotation
ICBR annotation: calcium-binding mitochondrial protein anon-60Da, putative, expressed
Blast result AT1G65540 : 0.00E+00
Blast annotation: LETM1-like protein
2.Location
Scaffold: PH01003155
Strand: +
| Region | Start | End |
| gene | 128851 | 139449 |
| mRNA | 128851 | 139449 |
| exon | 128851 | 131932 |
| exon | 132201 | 132455 |
| exon | 132549 | 132695 |
| exon | 132801 | 132889 |
| exon | 132963 | 133055 |
| exon | 133569 | 133695 |
| exon | 133744 | 133786 |
| exon | 133974 | 134002 |
| exon | 134223 | 134287 |
| exon | 134364 | 134535 |
| exon | 135934 | 136131 |
| exon | 136233 | 136280 |
| exon | 136364 | 136510 |
| exon | 137527 | 137609 |
| exon | 139128 | 139243 |
| exon | 139351 | 139449 |
| CDS | 131444 | 131932 |
| CDS | 132201 | 132455 |
| CDS | 132549 | 132695 |
| CDS | 132801 | 132889 |
| CDS | 132963 | 133055 |
| CDS | 133569 | 133695 |
| CDS | 133744 | 133786 |
| CDS | 133974 | 134002 |
| CDS | 134223 | 134287 |
| CDS | 134364 | 134535 |
| CDS | 135934 | 136131 |
| CDS | 136233 | 136280 |
| CDS | 136364 | 136510 |
| CDS | 137527 | 137609 |
| CDS | 139128 | 139243 |
| CDS | 139351 | 139433 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07766.12 | LETM1 | 160 | 445 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005509 | calcium ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.