PH01003159G0070's details annotation
1.Annotation
ICBR annotation: OsIAA30 - Auxin-responsive Aux/IAA gene family member, expressed
Blast result AT3G04730 : 2.90E-69
Blast annotation: indoleacetic acid-induced protein 16
2.Location
Scaffold: PH01003159
Strand: -
| Region | Start | End |
| gene | 55354 | 59386 |
| mRNA | 55354 | 59386 |
| exon | 55354 | 56606 |
| exon | 56719 | 56857 |
| exon | 56929 | 57167 |
| exon | 58901 | 59386 |
| CDS | 56489 | 56606 |
| CDS | 56719 | 56857 |
| CDS | 56929 | 57167 |
| CDS | 58901 | 59214 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000111 | protein insertion into membrane, ATP citrate synthase activity, succinate-CoA ligase (ADP-forming) activity, regulation_of_anion_transport voltage-gated anion channel activity, anion transport, |
| coexpression network | CFinderM000117 | nuclear chromosome, Glycolysis_/_Gluconeogenesis Ino80_complex ATP citrate synthase activity, phosphoglycerate kinase activity, succinate-CoA ligase (ADP-forming) activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | AUX/IAA |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02309.15 | AUX_IAA | 8 | 254 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005634 | nucleus |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0046983 | protein dimerization activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.