Annotation of co-expression genes

PH01003162G0260's details annotation

1.Annotation

ICBR annotation: nucleobase-ascorbate transporter, putative, expressed

Blast result AT5G62890 : 0
Blast annotation: Xanthine/uracil permease family protein

2.Location

Scaffold: PH01003162
Strand: -

RegionStartEnd
gene157324162466
mRNA157324162466
exon157324157747
exon158308158468
exon158534158611
exon159328159405
exon159678159769
exon159868159926
exon160024160110
exon160247160343
exon160485160669
exon160756160815
exon160928161003
exon161109161479
exon161596161693
exon161827162466
CDS157529157747
CDS158308158468
CDS158534158611
CDS159328159405
CDS159678159769
CDS159868159926
CDS160024160110
CDS160247160343
CDS160485160669
CDS160756160815
CDS160928161003
CDS161109161479
CDS161596161693
CDS161827161926

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00860.19Xan_ur_permease35432

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005215transporter activity
GO:0006810transport
GO:0016020membrane
GO:0055085transmembrane transport

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.