PH01003167G0090's details annotation
1.Annotation
ICBR annotation: ZOS5-12 - C2H2 zinc finger protein, expressed
Blast result AT5G22650 : 1.40E-10
Blast annotation: histone deacetylase 2B
2.Location
Scaffold: PH01003167
Strand: +
| Region | Start | End |
| gene | 72257 | 76546 |
| mRNA | 72257 | 76546 |
| exon | 72257 | 73122 |
| exon | 73366 | 73526 |
| exon | 73630 | 73710 |
| exon | 73789 | 73885 |
| exon | 73970 | 74063 |
| exon | 74338 | 74428 |
| exon | 74503 | 76546 |
| CDS | 73095 | 73122 |
| CDS | 73366 | 73526 |
| CDS | 73630 | 73710 |
| CDS | 73789 | 73885 |
| CDS | 73970 | 74063 |
| CDS | 74338 | 74428 |
| CDS | 74503 | 74628 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000081 | chromosome, centromeric region, GH17 Glycoside_Hydrolases CBM43 Carbohydrate-Binding_Modules mitosis, |
| coexpression network | CFinderM000603 | Spliceosome |
| coexpression network | CFinderM001300 | regulation of actin filament polymerization, HD-ZIP Transcription_Regulator(from PlantTFDB) SBP Transcription_Regulator(from PlantTFDB) HB-HD-ZIP Transcription_Regulator(from iTAK) cytoskeleton, molybdenum ion binding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.