PH01003168G0050's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT5G47690 : 0.00E+00
Blast annotation: binding
2.Location
Scaffold: PH01003168
Strand: -
| Region | Start | End |
| gene | 40419 | 57956 |
| mRNA | 40419 | 57956 |
| exon | 40419 | 40799 |
| exon | 40891 | 41039 |
| exon | 41147 | 41316 |
| exon | 41387 | 41491 |
| exon | 41666 | 41674 |
| exon | 42048 | 42085 |
| exon | 42174 | 42260 |
| exon | 42682 | 42733 |
| exon | 42833 | 42906 |
| exon | 43079 | 43180 |
| exon | 43272 | 43826 |
| exon | 43917 | 43997 |
| exon | 44359 | 44502 |
| exon | 44615 | 44765 |
| exon | 45289 | 45488 |
| exon | 45817 | 45934 |
| exon | 46018 | 46154 |
| exon | 46249 | 46314 |
| exon | 46628 | 46754 |
| exon | 46847 | 46998 |
| exon | 48459 | 48641 |
| exon | 49018 | 49200 |
| exon | 49529 | 49717 |
| exon | 49803 | 49851 |
| exon | 49938 | 50087 |
| exon | 50659 | 50804 |
| exon | 51063 | 51135 |
| exon | 51227 | 51372 |
| exon | 51432 | 51625 |
| exon | 51715 | 51931 |
| exon | 52532 | 52750 |
| exon | 52896 | 53022 |
| exon | 54070 | 54251 |
| exon | 54359 | 54562 |
| exon | 55566 | 55637 |
| exon | 56962 | 57956 |
| CDS | 40764 | 40799 |
| CDS | 40891 | 41039 |
| CDS | 41147 | 41316 |
| CDS | 41387 | 41491 |
| CDS | 41666 | 41674 |
| CDS | 42048 | 42085 |
| CDS | 42174 | 42260 |
| CDS | 42682 | 42733 |
| CDS | 42833 | 42906 |
| CDS | 43079 | 43180 |
| CDS | 43272 | 43826 |
| CDS | 43917 | 43997 |
| CDS | 44359 | 44502 |
| CDS | 44615 | 44765 |
| CDS | 45289 | 45488 |
| CDS | 45817 | 45934 |
| CDS | 46018 | 46154 |
| CDS | 46249 | 46314 |
| CDS | 46628 | 46754 |
| CDS | 46847 | 46998 |
| CDS | 48459 | 48641 |
| CDS | 49018 | 49200 |
| CDS | 49529 | 49717 |
| CDS | 49803 | 49851 |
| CDS | 49938 | 50087 |
| CDS | 50659 | 50804 |
| CDS | 51063 | 51135 |
| CDS | 51227 | 51372 |
| CDS | 51432 | 51625 |
| CDS | 51715 | 51931 |
| CDS | 52532 | 52750 |
| CDS | 52896 | 53022 |
| CDS | 54070 | 54251 |
| CDS | 54359 | 54562 |
| CDS | 55566 | 55637 |
| CDS | 56962 | 57051 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001711 | intracellular protein transport, binding, |
| coexpression network | CFinderM001778 | GT16 GlycosylTransferases oligosaccharide biosynthetic process, Golgi stack, 7-methylguanosine mRNA capping, mRNA processing, alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, mRNA guanylyltransferase activity, N-Glycan_biosynthesis Various_types_of_N-glycan_biosynthesis binding, |
| coexpression network | CFinderM001841 | proton-transporting V-type ATPase, V0 domain, proton-transporting two-sector ATPase complex, proton-transporting domain, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005488 | binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.