PH01003178G0010's details annotation
1.Annotation
ICBR annotation: CBS domain-containing protein, putative, expressed
Blast result AT5G50530 : 2.00E-146
Blast annotation: CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein
2.Location
Scaffold: PH01003178
Strand: -
| Region | Start | End |
| gene | 387 | 4164 |
| mRNA | 387 | 4164 |
| exon | 387 | 1368 |
| exon | 1570 | 1655 |
| exon | 1778 | 1911 |
| exon | 1986 | 2044 |
| exon | 2552 | 2610 |
| exon | 2691 | 2796 |
| exon | 2911 | 2977 |
| exon | 3266 | 3344 |
| exon | 3482 | 3652 |
| exon | 3736 | 3868 |
| exon | 3964 | 4164 |
| CDS | 1135 | 1368 |
| CDS | 1570 | 1655 |
| CDS | 1778 | 1911 |
| CDS | 1986 | 2044 |
| CDS | 2552 | 2610 |
| CDS | 2691 | 2796 |
| CDS | 2911 | 2977 |
| CDS | 3266 | 3344 |
| CDS | 3482 | 3652 |
| CDS | 3736 | 3868 |
| CDS | 3964 | 4158 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00571.27 | CBS | 23 | 68 |
| PF00571.27 | CBS | 83 | 127 |
| PF00571.27 | CBS | 213 | 258 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.