PH01003187G0090's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT3G62200 : 9.00E-104
Blast annotation: Putative endonuclease or glycosyl hydrolase
2.Location
Scaffold: PH01003187
Strand: +
| Region | Start | End |
| gene | 56147 | 61507 |
| mRNA | 56147 | 61507 |
| exon | 56147 | 56454 |
| exon | 58180 | 58572 |
| exon | 58719 | 59760 |
| exon | 59835 | 59892 |
| exon | 60202 | 60300 |
| exon | 60332 | 61507 |
| CDS | 56223 | 56454 |
| CDS | 58180 | 58572 |
| CDS | 58719 | 59760 |
| CDS | 59835 | 59892 |
| CDS | 60202 | 60300 |
| CDS | 60332 | 60550 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001210 | Peroxisome protein refolding, Nucleotide_excision_repair Ubiquitin_mediated_proteolysis cellular protein metabolic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01936.17 | NYN | 8 | 145 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005777 | peroxisome |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.