PH01003190G0050's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT1G77460 : 0
Blast annotation: Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein
2.Location
Scaffold: PH01003190
Strand: +
| Region | Start | End |
| gene | 59096 | 64232 |
| mRNA | 59096 | 64232 |
| exon | 59096 | 59431 |
| exon | 59728 | 62881 |
| exon | 63142 | 64232 |
| CDS | 59358 | 59431 |
| CDS | 59728 | 62881 |
| CDS | 63142 | 63249 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001111 | vacuolar proton-transporting V-type ATPase, V1 domain, C2C2-Dof Transcription_Regulator(from iTAK) Dof Transcription_Regulator(from PlantTFDB) binding, proton-transporting ATPase activity, rotational mechanism, ATP hydrolysis coupled proton transport, |
| coexpression network | CFinderM001537 | vacuolar proton-transporting V-type ATPase, V1 domain, ATP hydrolysis coupled proton transport, MYB_related Transcription_Regulator(from PlantTFDB) RLK-Pelle_RLCK-VIIa-2 (from iTAK) MYB-related Transcription_Regulator(from iTAK) |
| coexpression network | CFinderM001593 | vacuolar proton-transporting V-type ATPase, V1 domain, ATP hydrolysis coupled proton transport, proton-transporting ATPase activity, rotational mechanism, binding, |
| coexpression network | CFinderM001715 | vacuolar proton-transporting V-type ATPase, V1 domain, RLK-Pelle_RLCK-VIIa-2 (from iTAK) STE_STE11 (from iTAK) ATP hydrolysis coupled proton transport, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00514.22 | Arm | 508 | 543 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000221 | vacuolar proton-transporting V-type ATPase, V1 domain |
| GO:0005488 | binding |
| GO:0005515 | protein binding |
| GO:0015991 | ATP hydrolysis coupled proton transport |
| GO:0046961 | proton-transporting ATPase activity, rotational mechanism |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.