PH01003190G0060's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT1G77460 : 0.00E+00
Blast annotation: Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein
2.Location
Scaffold: PH01003190
Strand: +
| Region | Start | End |
| gene | 64355 | 69766 |
| mRNA | 64355 | 69766 |
| exon | 64355 | 68052 |
| exon | 68374 | 68828 |
| exon | 69082 | 69198 |
| exon | 69289 | 69766 |
| CDS | 65601 | 68052 |
| CDS | 68374 | 68828 |
| CDS | 69082 | 69198 |
| CDS | 69289 | 69447 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001593 | vacuolar proton-transporting V-type ATPase, V1 domain, ATP hydrolysis coupled proton transport, proton-transporting ATPase activity, rotational mechanism, binding, |
| coexpression network | CFinderM001836 | GT66 GlycosylTransferases GT96 GlycosylTransferases oligosaccharyl transferase activity, protein glycosylation, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00168.29 | C2 | 934 | 1033 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005488 | binding |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.