Annotation of co-expression genes

PH01003192G0120's details annotation

1.Annotation

ICBR annotation: WD40-like, putative, expressed

Blast result AT5G28350 : 4.00E-119
Blast annotation: Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotide exchange factor

2.Location

Scaffold: PH01003192
Strand: -

RegionStartEnd
gene8161686683
mRNA8161686683
exon8161681636
exon8169181867
exon8206682119
exon8224882422
exon8249282634
exon8271482909
exon8350883883
exon8433984393
exon8474684914
exon8535985774
exon8589985980
exon8606686214
exon8630186683
CDS8162281636
CDS8169181867
CDS8206682119
CDS8224882422
CDS8249282634
CDS8271482909
CDS8350883883
CDS8433984393
CDS8474684914
CDS8535985774
CDS8589985980
CDS8606686214
CDS8630186546

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001150CBM22 Carbohydrate-Binding_Modules
GH10 Glycoside_Hydrolases
nucleosome,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF07064.12RIC1657746

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005515protein binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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