Annotation of co-expression genes

PH01003194G0130's details annotation

1.Annotation

ICBR annotation: pyruvate kinase, putative, expressed

Blast result AT5G08570 : 1.40E-68
Blast annotation: Pyruvate kinase family protein

2.Location

Scaffold: PH01003194
Strand: +

RegionStartEnd
gene97833104726
mRNA97833104726
exon9783398804
exon9885799119
exon9925799304
exon9941399535
exon99970100071
exon100237100332
exon100799101338
exon101768101863
exon103560104726
CDS9874198804
CDS9885799119
CDS9925799304
CDS9941399535
CDS99970100071
CDS100237100332
CDS100799101338
CDS101768101863
CDS103560103682

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000377ARR-B Transcription_Regulator(from PlantTFDB)
coexpression networkCFinderM000455glycolysis,
potassium ion binding,
pyruvate kinase activity,
NAD+ ADP-ribosyltransferase activity,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00892.19EamA110165
PF00224.20PK261415

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0000287magnesium ion binding
GO:0003824catalytic activity
GO:0004743pyruvate kinase activity
GO:0006096glycolysis
GO:0016020membrane
GO:0030955potassium ion binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.