Annotation of co-expression genes

PH01003205G0110's details annotation

1.Annotation

ICBR annotation: carboxyl-terminal peptidase, putative, expressed

Blast result AT5G50150 : 2.00E-165
Blast annotation: Protein of Unknown Function (DUF239)

2.Location

Scaffold: PH01003205
Strand: +

RegionStartEnd
gene7537880971
mRNA7537880971
exon7537876659
exon7675276838
exon7694077173
exon7809678104
exon7905979223
exon7931779370
exon7945079596
exon7983280971
CDS7644476659
CDS7675276838
CDS7694077173
CDS7809678104
CDS7905979223
CDS7931779370
CDS7945079596
CDS7983280209

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000888phosphatidylinositol metabolic process,
phosphatidylinositol phosphate kinase activity,
Inositol_phosphate_metabolism
Phosphatidylinositol_signaling_system
RLK-Pelle_LRR-VI-1 (from iTAK)
1-phosphatidylinositol-4-phosphate 5-kinase activity,
cellular protein metabolic process,
Phagosome
Endocytosis
ATP binding,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF14365.5Neprosin_AP70184
PF03080.14Neprosin198419

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
nullnull

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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