PH01003208G0110's details annotation
1.Annotation
ICBR annotation: glycosyltransferase family 43 protein, putative, expressed
Blast result AT2G37090 : 2.20E-77
Blast annotation: Nucleotide-diphospho-sugar transferases superfamily protein
2.Location
Scaffold: PH01003208
Strand: +
| Region | Start | End |
| gene | 64171 | 66676 |
| mRNA | 64171 | 66676 |
| exon | 64171 | 66676 |
| CDS | 65635 | 66312 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000678 | GT43 GlycosylTransferases RLK-Pelle_RLCK-VIIa-2 (from iTAK) |
| coexpression network | CFinderM001005 | GT43 GlycosylTransferases AUX/IAA Transcription_Regulator(from iTAK) RLK-Pelle_RLCK-VIIa-2 (from iTAK) Glutathione_metabolism Pentose_phosphate_pathway glucose metabolic process, |
| coexpression network | CFinderM001006 | GT43 GlycosylTransferases Phagosome galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| GlycosylTransferases | GT43 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03360.15 | Glyco_transf_43 | 130 | 352 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0015018 | galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity |
| GO:0016020 | membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.