PH01003208G0200's details annotation
1.Annotation
ICBR annotation: IQ calmodulin-binding motif domain containing protein, expressed
Blast result AT5G03040 : 1.40E-80
Blast annotation: IQ-domain 2
2.Location
Scaffold: PH01003208
Strand: +
| Region | Start | End |
| gene | 131125 | 135457 |
| mRNA | 131125 | 135457 |
| exon | 131125 | 131811 |
| exon | 132438 | 132716 |
| exon | 133632 | 133847 |
| exon | 133987 | 134106 |
| exon | 134203 | 135457 |
| CDS | 131737 | 131811 |
| CDS | 132438 | 132716 |
| CDS | 133632 | 133847 |
| CDS | 133987 | 134106 |
| CDS | 134203 | 134928 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001154 | clathrin_coat RLK-Pelle_LysM (from iTAK) clathrin_coat_assembly Trihelix Transcription_Regulator(from PlantTFDB) cellular amino acid biosynthetic process, RLK-Pelle_SD-2b (from iTAK) clathrin_binding 1-phosphatidylinositol_binding |
| coexpression network | CFinderM001162 | clathrin_coat_assembly clathrin_coat RLK-Pelle_SD-2b (from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00612.26 | IQ | 106 | 124 |
| PF13178.5 | DUF4005 | 379 | 433 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.